Scientific method

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Scientific method refers to the body of techniques for investigating phenomena, acquiring new knowledge, or correcting and integrating previous knowledge. It is based on gathering observable, empirical and measurable evidence subject to specific principles of reasoning.Isaac Newton (1687, 1713, 1726). "[1] Rules for the study of natural philosophy", Philosophiae Naturalis Principia Mathematica, Third edition. The General Scholium containing the 4 rules follows Book 3, The System of the World. Reprinted on pages 794-796 of I. Bernard Cohen and Anne Whitman's 1999 translation, University of California Press ISBN 0-520-08817-4, 974 pages. A scientific method consists of the collection of data through observation and experimentation, and the formulation and testing of hypotheses. scientific method, Merriam-Webster Dictionary.

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Although procedures vary from one field of inquiry to another, identifiable features distinguish scientific inquiry from other methodologies of knowledge. Scientific researchers propose hypotheses as explanations of phenomena, and design experimental studies to test these hypotheses. These steps must be repeatable in order to predict dependably any future results. Theories that encompass wider domains of inquiry may bind many hypotheses together in a coherent structure. This in turn may help form new hypotheses or place groups of hypotheses into context.

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Scientific Method: The scientific method denotes the principles that guide scientific research and experimentation.

Among other facets shared by the various fields of inquiry is the conviction that the process must be objective to reduce a biased interpretation of the results. Another basic expectation is to document, archive and share all data and methodology so they are available for careful scrutiny by other scientists, thereby allowing other researchers the opportunity to verify results by attempting to reproduce them. This practice, called full disclosure, also allows statistical measures of the reliability of these data to be established.

Introduction to scientific method

, 965–1039, Basra.]]

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Since Ibn al-Haytham (Alhacen, 965–1039), a pioneer of scientific method, the emphasis has been on seeking truth:

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The conjecture that "Light travels through transparent bodies in straight lines only", was corroborated by Alhacen only after years of effort. His demonstration of the conjecture was to place a straight stick or a taut thread next to the light beam,p. 136, as quoted by Shmuel Sambursky (1974) Physical thought from the Presocratics to the Quantum Physicists ISBN 0-87663-712-8. to prove that light travels in a straight line.

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Scientific methodology has been practiced in some form for at least one thousand years. There are difficulties in a formulaic statement of method, however. As William Whewell (1794–1866) noted in his History of Inductive Science (1837) and in Philosophy of Inductive Science (1840), "invention, sagacity, genius" are required at every step in scientific method. It is not enough to base scientific method on experience alone"...the statement of a law—A depends on B—always transcends experience." p. 6 —Max Born (1949), Natural Philosophy of Cause and Chance; multiple steps are needed in scientific method, ranging from our experience to our imagination, back and forth.

[Book] Science Rules: A Historical Introduction to Scientific Methods The Johns Hopkins University Press

In the twentieth century, a hypothetico-deductive model for scientific method was formulated (for a more formal discussion, see below):

1. Use your experience: Consider the problem and try to make sense of it. Look for previous explanations. If this is a new problem to you, then move to step 2.
2. Form a conjecture: When nothing else is yet known, try to state an explanation, to someone else, or to your notebook.
3. Deduce a prediction from that explanation: If you assume 2 is true, what consequences follow?
4. Test : Look for the opposite of each consequence in order to disprove 2. It is a logical error to seek 3 directly as proof of 2. This error is called affirming the consequent.

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An introduction to the steps of the scientific method ... Scientists use the scientific method to search for cause and effect relationships in nature. ...
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This model underlies the scientific revolution. One thousand years ago, Alhacen demonstrated the importance of steps 1 and 4. Galileo (1638) also showed the importance of step 4 (also called Experiment) in Two New Sciences. One possible sequence in this model would be 1, 2, 3, 4. If the outcome of 4 holds, and 3 is not yet disproven, you may continue with 3, 4, 1, and so forth; but if the outcome of 4 shows 3 to be false, you will have go back to 2 and try to invent a new 2, deduce a new 3, look for 4, and so forth.

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Note that this method can never absolutely verify (prove the truth of) 2. It can only falsify 2."I believe that we do not know anything for certain, but everything probably." —Christiaan Huygens, Letter to Pierre Perrault, 'Sur la préface de M. Perrault de son traité del'Origine des fontaines' [3], Oeuvres Complétes de Christiaan Huygens (1897), Vol. 7, 298. Quoted in Jacques Roger, The Life Sciences in Eighteenth-Century French Thought, ed. Keith R. Benson and trans. Robert Ellrich (1997), 163. Quotation selected by W.F. Bynum and Roy Porter (eds., 2005), Oxford Dictionary of Scientific Quotations ISBN 0-19-858409-1 p. 317 quotation 4. (This is what Einstein meant when he said "No amount of experimentation can ever prove me right; a single experiment can prove me wrong.")

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Scientific_method

In the twentieth century, Ludwik Fleck (1896–1961) and others found that we need to consider our experiences more carefully, because our experience may be biased, and that we need to be more exact when describing our experiences. These considerations are discussed below.

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Truth and belief

Belief can alter observations; those with a particular belief will often see things as reinforcing their belief, even if they do not."Observation and experiment are subject to a very popular myth. ... The knower is seen as a ... Julius Caesar winning his battles according to ... formula. Even research workers will admit that the first observation may have been a little imprecise, whereas the second and third were 'adjusted to the facts' ... until tradition, education, and familiarity have produced a readiness for stylized (that is directed and restricted) perception and action; until an answer becomes largely pre-formed in the question, and a decision confined merely to 'yes' or 'no' or perhaps to a numerical determination; until methods and apparatus automatically carry out the greatest part of the mental work for us." Fleck labels this thought style (Denkstil). Ludwik Fleck, p.84 of Genesis and Development of a Scientific Fact (written in German, 1935, Entstehung und Entwickelung einer wissenschaftlichen Tatsache: Einführung in die Lehre vom Denkstil und Denkkollectiv) ISBN 0-226-25325-2 Needham's Science and Civilization in China uses the 'flying horse' image as an example of observation: in it, a horse's legs are depicted as splayed, when the stop-action picture by Eadweard Muybridge shows otherwise. Note that at the moment that no hoof is touching the ground, the horse's legs are gathered together and are not splayed. 's studies of a horse gallop]] Earlier paintings depict the incorrect flying horse observation. This demonstrates Ludwik Fleck's caution that people observe what they expect to observe, until shown otherwise; our beliefs will affect our observations (and therefore our subsequent actions). The purpose of the scientific method is to test a hypothesis, a belief about how things are, via repeatable experimental observations which can contradict the hypothesis so as to fight this observer bias.

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Elements of scientific method

There are many ways of outlining the basic method shared by all fields of scientific inquiry. The following examples are typical classifications of the most important components of the method on which there is wide agreement in the scientific community and among philosophers of science. There are, however, disagreements about some aspects.

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The following set of methodological elements and organization of procedures tends to be more characteristic of natural sciences than social sciences. In the social sciences mathematical and statistical methods of verification and hypotheses testing may be less stringent. Nonetheless the cycle of hypothesis, verification and formulation of new hypotheses will resemble the cycle described below.

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[Book] A Beginner's Guide to Scientific Method Wadsworth Publishing

Each element of a scientific method is subject to peer review for possible mistakes. These activities do not describe all that scientists do (see below) but apply mostly to experimental sciences (e.g., physics, chemistry). The elements above are often taught in the educational system.In the inquiry-based education paradigm, the stage of "characterization, observation, definition, …" is more briefly summed up under the rubric of a Question.

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An explanation on what the scientific method is and does. ... V. Are there circumstances in which the Scientific Method is not applicable? ...
teacher.nsrl.rochester.edu/phy_labs/AppendixE/AppendixE.html

Scientific method is not a recipe: it requires intelligence, imagination, and creativity."To raise new questions, new possibilities, to regard old problems from a new angle, requires creative imagination and marks real advance in science." p.92, Albert Einstein and Leopold Infeld (1938), The Evolution of Physics: from early concepts to relativity and quanta ISBN 0-671-20156-5 It is also an ongoing cycle, constantly developing more useful, accurate and comprehensive models and methods. For example, when Einstein developed the Special and General Theories of Relativity, he did not in any way refute or discount Newton's Principia. On the contrary, if the astronomically large, the vanishingly small, and the extremely fast are reduced out from Einstein's theories — all phenomena that Newton could not have observed — Newton's equations remain. Einstein's theories are expansions and refinements of Newton's theories, and observations that increase our confidence in them also increase our confidence in Newton's approximations to them.

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A linearized, pragmatic scheme of the four points above is sometimes offered as a guideline for proceeding:Crawford S, Stucki L (1990), "Peer review and the changing research record", "J Am Soc Info Science", vol. 41, pp 223-228

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This swaps two steps in the traditional scientific method... Instead of forming a hypothesis and then testing it by collecting data, a scientist can mine a large collection of data to find candidate hypotheses, and then confirm with ...

The iterative cycle inherent in this step-by-step methodology goes from point 3 to 6 back to 3 again.

[Book] Scientific Method for Ecological Research Cambridge University Press

While this schema outlines a typical hypothesis/testing method,See, e.g., Gauch, Hugh G., Jr., Scientific Method in Practice (2003), esp. chapters 5-8 it should also be noted that a number of philosophers, historians and sociologists of science (perhaps most notably Paul Feyerabend) claim that such descriptions of scientific method have little relation to the ways science is actually practiced.

[Site] scientific method: Definition from Answers.com
scientific method n. The principles and empirical processes of discovery and demonstration considered characteristic of or necessary for scientific
www.answers.com/topic/scientific-method

The "operational" model combines the concepts of factory-style processing, operational definition, and utility:

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The Keystones of Science project, sponsored by the journal Science, has selected a number of scientific articles from that journal and annotated them, illustrating how different parts of each article embody scientific method. Here is an annotated example of this scientific method example titled Microbial Genes in the Human Genome: Lateral Transfer or Gene Loss?.

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DNA example

Each element of scientific method is illustrated below by an example from the discovery of the structure of DNA:
*DNA-characterizations: in this case, although the significance of the gene had been established, the mechanism was unclear to anyone, as of 1950.
*DNA-hypotheses: Crick and Watson hypothesized that the gene had a physical basis - it was helical.
*DNA-predictions: from earlier work on tobacco mosaic virus, Watson was aware of the significance of Crick's formulation of the transform of a helix.Cochran W, Crick FHC and Vand V. (1952) "The Structure of Synthetic Polypeptides. I. The Transform of Atoms on a Helix", Acta Cryst., 5, 581-586. Thus he was primed for the significance of the X-shape in photo 51.
*DNA-experiments: Watson sees photo 51.

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The examples are continued in "Evaluations and iterations" with DNA-iterations.

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Characterizations

Scientific method depends upon increasingly more sophisticated characterizations of subjects of the investigation. (The subjects can also be called unsolved problems or the unknowns). For example, Benjamin Franklin correctly characterized St. Elmo's fire as electrical in nature, but it has taken a long series of experiments and theory to establish this. While seeking the pertinent properties of the subjects, this careful thought may also entail some definitions and observations; the observations often demand careful measurements and/or counting.
  • "I am not accustomed to saying anything with certainty after only one or two observations."
Andreas Vesalius, Epistola, Rationem, Modumque Propinandi Radicis Chynae Decocti (1546), 141. Quoted and translated in C.D. O'Malley, Andreas Vesalius of Brussels, (1964), 116. As quoted by W.F. Bynum & Roy Porter (2005), Oxford Dictionary of Scientific Quotations Andreas Vesalius, 597:1 ISBN 0-19-858409-1 --Andreas Vesalius (1546)

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Now this isn't your beloved Darwinian natural selection, but it is a tradition that is equally as theoretically grounded-- the scientific method. One of the most dangerous ideas to take hold among right wingers and libertarians is the ...

The systematic, careful collection of measurements or counts of relevant quantities is often the critical difference between pseudo-sciences, such as alchemy, and a science, such as chemistry or biology. Scientific measurements taken are usually tabulated, graphed, or mapped, and statistical manipulations, such as correlation and regression, performed on them. The measurements might be made in a controlled setting, such as a laboratory, or made on more or less inaccessible or unmanipulatable objects such as stars or human populations. The measurements often require specialized scientific instruments such as thermometers, spectroscopes, or voltmeters, and the progress of a scientific field is usually intimately tied to their invention and development.

[Book] Scientific Method in Practice Cambridge University Press

Uncertainty
Measurements in scientific work are also usually accompanied by estimates of their uncertainty. The uncertainty is often estimated by making repeated measurements of the desired quantity. Uncertainties may also be calculated by consideration of the uncertainties of the individual underlying quantities that are used. Counts of things, such as the number of people in a nation at a particular time, may also have an uncertainty due to limitations of the method used. Counts may only represent a sample of desired quantities, with an uncertainty that depends upon the sampling method used and the number of samples taken.

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Definition
Measurements demand the use of operational definitions of relevant quantities. That is, a scientific quantity is described or defined by how it is measured, as opposed to some more vague, inexact or "idealized" definition. For example, electrical current, measured in amperes, may be operationally defined in terms of the mass of silver deposited in a certain time on an electrode in an electrochemical device that is described in some detail. The operational definition of a thing often relies on comparisons with standards: the operational definition of "mass" ultimately relies on the use of an artifact, such as a certain kilogram of platinum-iridium kept in a laboratory in France.

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The scientific definition of a term sometimes differs substantially from its natural language usage. For example, mass and weight overlap in meaning in common discourse, but have distinct meanings in mechanics. Scientific quantities are often characterized by their units of measure which can later be described in terms of conventional physical units when communicating the work.

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Well, I'm shocked. I actually found something informative in a FARK thread -- a flowchart describing how to apply the scientific method. The image is from

New theories sometimes arise upon realizing that certain terms had not previously been sufficiently clearly defined. For example, Albert Einstein's first paper on relativity begins by defining simultaneity and the means for determining length. These ideas were skipped over by Isaac Newton with, "I do not define time, space, place and motion, as being well known to all." Einstein's paper then demonstrates that they (viz., absolute time and length independent of motion) were approximations. Francis Crick cautions us that when characterizing a subject, however, it can be premature to define something when it remains ill-understood.Crick, Francis (1994), The Astonishing Hypothesis ISBN 0-684-19431-7 p.20 In Crick's study of consciousness, he actually found it easier to study awareness in the visual system, rather than to study free will, for example. His cautionary example was the gene; the gene was much more poorly understood before Watson and Crick's pioneering discovery of the structure of DNA; it would have been counterproductive to spend much time on the definition of the gene, before them.

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DNA-characterizations

The history of the discovery of the structure of DNA is a classic example of the elements of scientific method: in 1950 it was known that genetic inheritance had a mathematical description, starting with the studies of Gregor Mendel. But the mechanism of the gene was unclear. Researchers in Bragg's laboratory at Cambridge University made X-ray diffraction pictures of various molecules, starting with crystals of salt, and proceeding to more complicated substances. Using clues which were painstakingly assembled over the course of decades, beginning with its chemical composition, it was determined that it should be possible to characterize the physical structure of DNA, and the X-ray images would be the vehicle. ..2. DNA-hypotheses

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Precession of Mercury

of the perihelion (exaggerated)]]The characterization element can require extended and extensive study, even centuries. It took thousands of years of measurements, from the Chaldean, Indian, Persia, Greek, Arabic and European astronomers, to record the motion of planet Earth. Newton was able to condense these measurements into consequences of his laws of motion. But the perihelion of the planet Mercury's orbit exhibits a precession that is not fully explained by Newton's laws of motion. The observed difference for Mercury's precession between Newtonian theory and relativistic theory (approximately 43 arc-seconds per century), was one of the things that occurred to Einstein as a possible early test of his theory of General Relativity.

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Hypothesis development

A hypothesis is a suggested explanation of a phenomenon, or alternately a reasoned proposal suggesting a possible correlation between or among a set of phenomena.

[Book] Foundations of scientific method: The nineteenth century Indiana University Press

Normally hypotheses have the form of a mathematical model. Sometimes, but not always, they can also be formulated as existential statements, stating that some particular instance of the phenomenon being studied has some characteristic and causal explanations, which have the general form of universal statements, stating that every instance of the phenomenon has a particular characteristic.

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Scientists are free to use whatever resources they have — their own creativity, ideas from other fields, induction, Bayesian inference, and so on — to imagine possible explanations for a phenomenon under study. Charles Sanders Peirce, borrowing a page from Aristotle (Prior Analytics, 2.25) described the incipient stages of inquiry, instigated by the "irritation of doubt" to venture a plausible guess, as abductive reasoning. The history of science is filled with stories of scientists claiming a "flash of inspiration", or a hunch, which then motivated them to look for evidence to support or refute their idea. Michael Polanyi made such creativity the centerpiece of his discussion of methodology.

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William Glen observes that

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responsible for increases in lion and other wildlife populations. Most disturbing on the current scene (2005) is the revelation that biologists, many of whom work for wildlife agencies, no longer value the scientific method over environmentally correct agendas. For whatever reason agenda takes precedence, a pattern appears obvious in which too often dangerous predators

the success of a hypothesis, or its service to science, lies not simply in its perceived "truth", or power to displace, subsume or reduce a predecessor idea, but perhaps more in its ability to stimulate the research that will illuminate … bald suppositions and areas of vagueness.Glen,William (ed.), The Mass-Extinction Debates: How Science Works in a Crisis, Stanford University Press, Stanford, CA, 1994. ISBN 0-8047-2285-4. pp. 37-38.

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In general scientists tend to look for theories that are "elegant" or "beautiful". In contrast to the usual English use of these terms, they here refer to a theory in accordance with the known facts, which is nevertheless relatively simple and easy to handle. Occam's Razor serves as a rule of thumb for making these determinations.

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DNA-hypotheses

Linus Pauling proposed that DNA was a triple helix. Francis Crick and James Watson learned of Pauling's hypothesis, understood from existing data that Pauling was wrong and realized that Pauling would soon realize his mistake. So the race was on to figure out the correct structure. Except that Pauling did not realize at the time that he was in a race! ..3. DNA-predictions

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When you teach the Scientific Method to your students, you are helping them gain valuable critical thinking skills. As the students practice forming hypotheses and analyzing data, they…

Predictions from the hypothesis

Any useful hypothesis will enable predictions, by reasoning including deductive reasoning. It might predict the outcome of an experiment in a laboratory setting or the observation of a phenomenon in nature. The prediction can also be statistical and only talk about probabilities.

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It is essential that the outcome be currently unknown. Only in this case does the eventuation increase the probability that the hypothesis be true. If the outcome is already known, it's called a consequence and should have already been considered while formulating the hypothesis.

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If the predictions are not accessible by observation or experience, the hypothesis is not yet useful for the method, and must wait for others who might come afterward, and perhaps rekindle its line of reasoning. For example, a new technology or theory might make the necessary experiments feasible.

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DNA-predictions

The hypothesis (by James Watson and Francis Crick among others) that DNA had a helical structure implied the prediction that it would produce an x shaped X-ray diffraction pattern. This followed from the work of Cochran, Crick and Vand (and independently by Stokes) who had provided a mathematical basis for the empirical observation that helical structures produce x shapes.

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Fig 1: The Scientific Process The process begins with a theory . There are many ways in which a theory can be developed. A hypothesis is then proposed based on the theory. It must meet certain conditions.

Also in their first paper, Watson and Crick predicted that the double helix structure that they discovered would prove important in biology, writing "It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material". ..4. DNA-experiments

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General relativity

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Einstein's theory of General Relativity makes several specific predictions about the observable structure of space-time, such as a prediction that light bends in a gravitational field and that the amount of bending depends in a precise way on the strength of that gravitational field. Arthur Eddington's observations made during a 1919 solar eclipse supported General Relativity rather than Newtonian gravitation.

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Experiments

Once predictions are made, they can be tested by experiments. If test results contradict predictions, then the hypotheses are called into question and explanations may be sought. Sometimes experiments are conducted incorrectly and are at fault. If the results confirm the predictions, then the hypotheses are considered likely to be correct but might still be wrong and are subject to further testing. The experimental control is a technique for dealing with observational error. This technique uses the contrast between multiple samples (or observations) under differing conditions, to see what varies or what remains the same. We vary the conditions for each measurement, to help isolate what has changed. Mill's canons can then help us figure out what the important factor is. Factor analysis is one technique for discovering the important factor in an effect.

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Depending on the predictions, the experiments can have different shapes. It could be a classical experiment in a laboratory setting, a double-blind study or an archaeological excavation. Even taking a plane from New York to Paris is an experiment which tests the aerodynamical hypotheses used for constructing the plane.

Scientists assume an attitude of openness and accountability on the part of those conducting an experiment. Detailed record keeping is essential, to aid in recording and reporting on the experimental results, and providing evidence of the effectiveness and integrity of the procedure. They will also assist in reproducing the experimental results. Traces of this tradition can be seen in the work of Hipparchus (190-120 BCE), when determining a value for the precession of the Earth, while controlled experiments can be seen in the works of Muslim scientists such as Geber (721-815 CE), al-Battani (853–929) and Alhacen (965-1039).

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DNA-experiments

Watson and Crick showed an initial (and incorrect) proposal for the structure of DNA to a team from Kings College - Rosalind Franklin, Maurice Wilkins, and Raymond Gosling. Franklin immediately spotted the flaws which concerned the water content. Later Watson saw Franklin's detailed X-ray diffraction images which showed an X-shape and confirmed that the structure was helical"The instant I saw the picture my mouth fell open and my pulse began to race." -- James D. Watson (1968), The Double Helix, page 167. New York: Atheneum, Library of Congress card number 68-16217. Page 168 shows the X-shaped pattern of the B-form of DNA, clearly indicating crucial details of its helical structure to Watson and Crick.. This rekindled Watson and Crick's model building and led to the correct structure. ..1. DNA-characterizations

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The Scientific Method State the Problem

Evaluation and iteration

Testing and improvement

The scientific process is iterative. At any stage it is possible that some consideration will lead the scientist to repeat an earlier part of the process. Failure to develop an interesting hypothesis may lead a scientist to re-define the subject they are considering. Failure of a hypothesis to produce interesting and testable predictions may lead to reconsideration of the hypothesis or of the definition of the subject. Failure of the experiment to produce interesting results may lead the scientist to reconsidering the experimental method, the hypothesis or the definition of the subject.

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Other scientists may start their own research and enter the process at any stage. They might adopt the characterization and formulate their own hypothesis, or they might adopt the hypothesis and deduce their own predictions. Often the experiment is not done by the person who made the prediction and the characterization is based on experiments done by someone else. Published results of experiments can also serve as a hypothesis predicting their own reproducibility.

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DNA-iterations

After considerable fruitless experimentation, being discouraged by their superior from continuing, and numerous false starts, Watson and Crick were able to infer the essential structure of DNA by concrete modeling of the physical shapes of the nucleotides which comprise it. They were guided by the bond lengths which had been deduced by Linus Pauling and by Rosalind Franklin's X-ray diffraction images. ..DNA Example

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Confirmation

Science is a social enterprise, and scientific work tends to be accepted by the community when it has been confirmed. Crucially, experimental and theoretical results must be reproduced by others within the science community. Researchers have given their lives for this vision; Georg Wilhelm Richmann was killed by ball lightning (1753) when attempting to replicate the 1752 kite-flying experiment of Benjamin Franklin.See, e.g., Physics Today, Vol. 59, #1, p42. [5]

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